Databases available for the BLAST search

TIGR Rice Genome Annotation DB: Annotated Genes

Entire set of Gene Sequences (intron-containing) from TIGR Rice Genome Annotation Database (osa1).

TIGR Rice Genome Annotation DB: Coding Sequences

Entire set of Coding Sequences (intron-less) from TIGR Rice Genome Annotation Database (osa1).

TIGR Rice Genome Annotation DB: Protein sequences

Entire set of Peptide Sequences from TIGR Rice Genome Annotation Database (osa1).

All Rice BAC & PAC Sequences in Genbank

All rice BAC and PAC sequences present in the PLANT and HTGS Divisions of GenBank

TIGR Rice Transcript Assemblies

The Rice Transcript Assemblies are assemblies of the expressed sequences from dbEST (EST) and GenBank .

KOME Rice FL-cDNAs

All of the publicly available sequences from the KOME FL-cDNA project.

TIGR Rice Repeat Database

A curated collection of known repetitive sequences in rice.

Rice Marker Sequences

All publicly available marker sequences for rice from the RGP and Gramene.

Rice FSTs

All publicly available FSTs for rice from GenBank.

TIGR Rice Gene Index

All Tentative Consensus (TCs) and singletons from the TIGR Rice Gene Index.

TIGR Wheat Gene Index

All Tentative Consensus (TCs) and singletons from the TIGR Wheat Gene Index.

TIGR Barley Gene Index

All Tentative Consensus (TCs) and singletons from the TIGR Barley Gene Index.

TIGR Maize Gene Index

All Tentative Consensus (TCs) and singletons from the TIGR Maize Gene Index.

TIGR Sugarcane (S officinarum) Gene Index

All Tentative Consensus (TCs) and singletons from the TIGR S officinarum Gene Index.

TIGR Sorghum Gene Index

All Tentative Consensus (TCs) and singletons from the TIGR Sorghum Gene Index.

TIGR Gramineae Repeat Database

A curated collection of known repetitive sequences in the Gramineae..

TIGR Rye Gene Index

All Tentative Consensus (TCs) and singletons from the TIGR Rye Gene Index.

BGI Indica (93-11) Contigs

Indica 93-11 Contigs from BGI.

TAIR Arabidopsis Annotation Release 6: TAIRR6_seq

Entire set of Gene Sequences (intron-containing) from TAIR Arabidopsis Release 6

TIGR Maize Assemblies v5 (AZMs)

Version 5 of the TIGR maize assemblies and singletons.

TIGR Sorghum Assemblies (ASBs)

The current version of the TIGR sorghum assemblies and singletons.

TAIR Arabidopsis Annotation Release 6: TAIRR6_cds

Entire set of Coding Sequences (intron-less) from TAIR Arabidopsis Release 6

TAIR Arabidopsis Annotation Release 6: TAIRR6_pep

Entire set of Peptide Sequences from TAIR Arabidopsis Release 6